Vingron, Martin: search on Z-Library

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1

DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach

Akdes Serin, Martin Vingron

Journal:

Algorithms for Molecular Biology

Year:

2011

Language:

english

File:

PDF, 4.97 MB

english, 2011

2

Determination of reliable regions in protein sequence alignments

Vingron, Martin, Argos, Patrick

Journal:

Protein Engineering Design and Selection

Year:

1990

Language:

english

File:

PDF, 453 KB

english, 1990

3

Self-correcting networks: Function, robustness, and motif distributions in biological signal processing

Kaluza, Pablo, Vingron, Martin, Mikhailov, Alexander S.

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2008

Language:

english

File:

PDF, 1.83 MB

english, 2008

4

Motif recognition and alignment for many sequences by comparison of dot-matrices

Martin Vingron, Patrick Argos

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 1.19 MB

english, 1991

5

Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series

Yuan Yuan, Yi-Ping Phoebe Chen, Shengyu Ni, Augix Guohua Xu, Lin Tang, Martin Vingron, Mehmet Somel, Philipp Khaitovich

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 359 KB

english, 2011

6

Genome-wide chromatin profiling of Legionella pneumophila -infected human macrophages reveals activation of the pro-bacterial host factor TNFAIP2

Du Bois, Ilona, Marsico, Annalisa, Bertrams, Wilhelm, Schweiger, Michal R., Caffrey, Brian E., Sittka-Stark, Alexandra, Eberhardt, Martin, Vera, Julio, Vingron, Martin, Schmeck, Bernd

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 1.35 MB

english, 2016

7

Genomic dissection of enhancers uncovers principles of combinatorial regulation and cell type-specific wiring of enhancer–promoter contacts

Thormann, Verena, Rothkegel, Maika C, Schöpflin, Robert, Glaser, Laura V, Djuric, Petar, Li, Na, Chung, Ho-Ryun, Schwahn, Kevin, Vingron, Martin, Meijsing, Sebastiaan H

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 30 KB

english, 2018

8

Alignment networks and electrical networks

Martin Vingron, Michael S. Waterman

Journal:

Discrete Applied Mathematics

Year:

1996

Language:

english

File:

PDF, 947 KB

english, 1996

9

A gene expression map of Arabidopsis thaliana development

Schmid, Markus, Davison, Timothy S, Henz, Stefan R, Pape, Utz J, Demar, Monika, Vingron, Martin, Schölkopf, Bernhard, Weigel, Detlef, Lohmann, Jan U

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 755 KB

english, 2005

10

Integrating sequence, evolution and functional genomics in regulatory genomics

Martin Vingron, Alvis Brazma, Richard Coulson, Jacques van Helden…

Journal:

Year:

2009

Language:

english

File:

PDF, 965 KB

english, 2009

11

Towards Integration of Multiple Alignment and Phylogenetic Tree Construction

VINGRON, MARTIN, VON HAESELER, ARNDT

Journal:

Journal of Computational Biology

Year:

1997

Language:

english

File:

PDF, 1.36 MB

english, 1997

12

Homology of 54K protein of signal-recognition particle, docking protein and two E. coli proteins with putative GTPbinding domains

Römisch, Karin, Webb, Jane, Herz, Joachim, Prehn, Siegfried, Frank, Rainer, Vingron, Martin, Dobberstein, Bernhard

Journal:

Year:

1989

File:

PDF, 624 KB

1989

13

Prioritization of gene regulatory interactions from large-scale modules in yeast

Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.73 MB

english, 2008

14

A Polyhedral Approach to RNA Sequence Structure Alignment

LENHOF, HANS-PETER, REINERT, KNUT, VINGRON, MARTIN

Journal:

Journal of Computational Biology

Year:

1998

Language:

english

File:

PDF, 1.73 MB

english, 1998

15

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

Schöne, Stefanie, Jurk, Marcel, Helabad, Mahdi Bagherpoor, Dror, Iris, Lebars, Isabelle, Kieffer, Bruno, Imhof, Petra, Rohs, Remo, Vingron, Martin, Thomas-Chollier, Morgane, Meijsing, Sebastiaan H.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

16

Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog)

Will, Anja J, Cova, Giulia, Osterwalder, Marco, Chan, Wing-Lee, Wittler, Lars, Brieske, Norbert, Heinrich, Verena, de Villartay, Jean-Pierre, Vingron, Martin, Klopocki, Eva, Visel, Axel, Lupiáñez, Dar

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 3.85 MB

english, 2017

17

A polyhedral approach to sequence alignment problems

John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron

Journal:

Discrete Applied Mathematics

Year:

2000

Language:

english

File:

PDF, 1.15 MB

english, 2000

18

Phylogenetic information improves homology detection

Marc Rehmsmeier, Martin Vingron

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 276 KB

english, 2001

19

Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators

Shen Lin, Stefan Haas, Tomasz Zemojtel, Peng Xiao, Martin Vingron, Renhui Li

Journal:

Year:

2011

Language:

english

File:

PDF, 1.66 MB

english, 2011

20

The SRF Target Gene Fhl2 Antagonizes RhoA/MAL-Dependent Activation of SRF

Ulrike Philippar, Gerhard Schratt, Christoph Dieterich, Judith M. Müller, Petra Galgóczy, Felix B. Engel, Mark T. Keating, Frank Gertler, Roland Schüle, Martin Vingron, Alfred Nordheim

Journal:

Year:

2004

Language:

english

File:

PDF, 816 KB

english, 2004

21

Stochastics of cellular differentiation explained by epigenetics: The case of T-cell differentiation and functional plasticity

Bhat, Jaydeep, Helmuth, Johannes, Chitadze, Guranda, Kouakanou, Léonce, Peters, Christian, Vingron, Martin, Ammerpohl, Ole, Kabelitz, Dieter

Journal:

Scandinavian Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 499 KB

english, 2017

22

Exonization of active mouse L1s: a driver of transcriptome evolution?

Tomasz Zemojtel, Tobias Penzkofer, Jörg Schultz, Thomas Dandekar, Richard Badge, Martin Vingron

Journal:

Year:

2007

Language:

english

File:

PDF, 820 KB

english, 2007

23

On the Power of Profiles for Transcription Factor Binding Site Detection

Rahmann, Sven, Müller, Tobias, Vingron, Martin

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.58 MB

english, 2003

24

Parameter estimation for the calibration and variance stabilization of microarray data

Huber, Wolfgang, von Heydebreck, Anja, Sueltmann, Holger, Poustka, Annemarie, Vingron, Martin

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2003

Language:

english

File:

PDF, 598 KB

english, 2003

25

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks

Lasserre, Julia, Chung, Ho-Ryun, Vingron, Martin, Beerenwinkel, Niko

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.78 MB

english, 2013

26

[ACM Press the second annual international conference - New York, New York, United States (1998.03.22-1998.03.25)] Proceedings of the second annual international conference on Computational molecular biology - RECOMB '98 - A polyhedral approach to RNA sequence structure alignment

Lenhof, Hans-Peter, Reinert, Knut, Vingron, Martin

Year:

1998

Language:

english

File:

PDF, 1012 KB

english, 1998

27

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Contig selection in physical mapping

Heber, Steffan, Stoye, Jens, Hoheisel, Jörg, Vingron, Martin

Year:

2000

Language:

english

File:

PDF, 1.60 MB

english, 2000

28

The Distance Precision Matrix: computing networks from non-linear relationships

Ghanbari, Mahsa, Lasserre, Julia, Vingron, Martin, Stegle, Oliver

Journal:

Year:

2018

Language:

english

File:

PDF, 495 KB

english, 2018

29

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise

Schöne, Stefanie, Bothe, Melissa, Einfeldt, Edda, Borschiwer, Marina, Benner, Philipp, Vingron, Martin, Thomas-Chollier, Morgane, Meijsing, Sebastiaan H., Reddy, Timothy E.

Journal:

Year:

2018

File:

PDF, 3.20 MB

2018

30

Sequence alignment and penalty choice: Review of concepts, case studies and implications

Martin Vingron, Michael S. Waterman

Journal:

Journal of Molecular Biology

Year:

1994

Language:

english

File:

PDF, 2.04 MB

english, 1994

31

Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions

Manke, Thomas, Roider, Helge G., Vingron, Martin, Levitt, Michael

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 435 KB

english, 2008

32

A new interactive protein sequence alignment program and comparison of its results with widely used algorithms

Rechid, Renas, Vingron, Martin, Argos, Patrick

Journal:

Year:

1989

Language:

english

File:

PDF, 586 KB

english, 1989

33

Comparison of sequence-dependent tiling array normalization approaches

Ho-Ryun Chung, Martin Vingron

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 479 KB

english, 2009

34

Comparative promoter region analysis powered by CORG

Christoph Dieterich, Steffen Grossmann, Andrea Tanzer, Stefan Röpcke, Peter F Arndt, Peter F Stadler, Martin Vingron

Journal:

Year:

2005

Language:

english

File:

PDF, 764 KB

english, 2005

35

In silicoidentification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach

Lukas Chavez, Abha S Bais, Martin Vingron, Hans Lehrach, James Adjaye, Ralf Herwig

Journal:

Year:

2009

Language:

english

File:

PDF, 1.65 MB

english, 2009

36

Application of Bootstrap Techniques to Physical Mapping

Steffen Heber, Jörg Hoheisel, Martin Vingron

Journal:

Year:

2000

Language:

english

File:

PDF, 180 KB

english, 2000

37

Synthetic sickness or lethality points at candidate combination therapy targets in glioblastoma

Szczurek, Ewa, Misra, Navodit, Vingron, Martin

Journal:

International Journal of Cancer

Year:

2013

Language:

english

File:

PDF, 4.06 MB

english, 2013

38

Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes

Toenjes, Martje, Schueler, Markus, Hammer, Stefanie, Pape, Utz J., Fischer, Jenny J., Berger, Felix, Vingron, Martin, Sperling, Silke

Journal:

Molecular BioSystems

Year:

2008

Language:

english

File:

PDF, 1.88 MB

english, 2008

39

Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns

Huska, Matthew, Vingron, Martin, Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.86 MB

english, 2016

40

Predicting enhancers in mammalian genomes using supervised hidden Markov models

Zehnder, Tobias, Benner, Philipp, Vingron, Martin

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.27 MB

english, 2019

41

A tandem sequence motif acts as a distance-dependent enhancer in a set of genes involved in translation by binding the proteins NonO and SFPQ

Stefan Roepcke, Silke Stahlberg, Holger Klein, Marcel H Schulz, Lars Theobald, Sabrina Gohlke, Martin Vingron, Diego J Walther

Journal:

Year:

2011

Language:

english

File:

PDF, 769 KB

english, 2011

42

Studying the Evolution of Promoter Sequences: A Waiting Time Problem

Behrens, Sarah, Vingron, Martin

Journal:

Journal of Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.50 MB

english, 2010

43

Polymer physics predicts the effects of structural variants on chromatin architecture

Bianco, Simona, Lupiáñez, Darío G., Chiariello, Andrea M., Annunziatella, Carlo, Kraft, Katerina, Schöpflin, Robert, Wittler, Lars, Andrey, Guillaume, Vingron, Martin, Pombo, Ana, Mundlos, Stefan, Nic

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 1.96 MB

english, 2018

44

Comparative 3'UTR Analysis Allows Identification of Regulatory Clusters that Drive Eph/ephrin Expression in Cancer Cell Lines

Winter, Jennifer, Roepcke, Stefan, Krause, Sven, Müller, Eva-Christina, Otto, Albrecht, Vingron, Martin, Schweiger, Susann, Preiss, Thomas

Journal:

Year:

2008

Language:

english

File:

PDF, 606 KB

english, 2008

45

Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing

Shobhit Gupta, Dorothea Zink, Bernhard Korn, Martin Vingron, Stefan A Haas

Journal:

Year:

2004

Language:

english

File:

PDF, 646 KB

english, 2004

46

Maximum Similarity: A New Formulation of Phylogenetic Reconstruction

Huang, Xiaoqiu, Vingron, Martin

Journal:

Journal of Computational Biology

Year:

2009

Language:

english

File:

PDF, 156 KB

english, 2009

47

Predicting the outcome of renal transplantation

Lasserre, Julia, Arnold, Steffen, Vingron, Martin, Reinke, Petra, Hinrichs, Carl

Journal:

Journal of the American Medical Informatics Association

Year:

2012

Language:

english

File:

PDF, 481 KB

english, 2012

48

A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts

Nils Blüthgen, Stefan Legewie, Szymon M. Kielbasa, Anja Schramme, Oleg Tchernitsa, Jana Keil, Andrea Solf, Martin Vingron, Reinhold Schäfer, Hanspeter Herzel, Christine Sers

Journal:

Year:

2009

Language:

english

File:

PDF, 309 KB

english, 2009

49

The Otto Warburg International Summer School and Workshop on Networks and Regulation

Peter F Arndt, Martin Vingron

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 172 KB

english, 2007

50

Special RECOMB 2003 Issue

Miller, Webb, Vingron, Martin

Journal:

Journal of Computational Biology

Year:

2004

Language:

english

File:

PDF, 26 KB

english, 2004

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